Common Workflow Language July 7th, 2020 Work Smarter, Not Harder: CWL and the Seven Bridges platforms Seven Bridges is committed to ensuring reproducibility and portability of research analysis, and the use of Common Workflow Language (CWL) for tool and workflow descriptions helps to facilitate both. CWL is an open-source, community-driven specification and emerging standard for describing how to run computational analysis with command line tools in … Written by Dan Ventre Cancer Genomics Cloud December 19th, 2019 Enabling Workflow Reproducibility in the Cloud with New Pipelines from the Genomic Data Commons When analyzing genomic data, there is a vast range of bioinformatics tools and workflows to choose from. However, making an informed selection from so many options can be overwhelming, even within a relatively narrow topic, such as harmonization to a reference genome. One approach to selecting the right tool for … Written by Manisha Ray Cancer Genomics Cloud December 11th, 2019 Bioinformatics Workflow Portability is Critical to Achieving Reproducibility With the explosion of genomic data in recent years, the number of bioinformatics workflows has seen a corresponding proliferation. Researchers and developers now have a wealth of analysis options, from building their own tools to taking advantage of those developed by others. However, a workflow developed in one environment may … Written by Manisha Ray Common Workflow Language May 11th, 2018 Enabling portable, reproducible, and scalable biomedical data analysis using Rabix Composer and CWL v1.0 We are excited to announce the release of version 1.0 of Rabix Composer, our integrated development environment for creating bioinformatics tools and workflows, and of support for Common Workflow Language (CWL) v1.0 on the Seven Bridges Platform! For an introduction to Rabix Composer and CWL, we encourage you to read … Written by Adrian Sharma & Liz Williams Common Workflow Language September 26th, 2017 Develop, test and scale reproducible bioinformatics workflows with Rabix Rabix: the toolkit for reproducible bioinformatics This summer, our development team announced the public launch of Rabix: the open source toolkit for creating and running reproducible computational workflows. Rabix was founded to overcome the challenges inherent in running reproducible bioinformatics analyses at scale. Here we show how the combination of software containers, workflow language and Rabix gives bioinformaticians the […] Written by Nick Cancer Genomics Cloud August 16th, 2017 CloudNeo: CWL Brings Cancer Genomics to the Cloud A cloud-based workflow for patient-specific tumor neoantigens CloudNeo—a computational workflow for identifying patient-specific tumor neoantigens from Next-Generation Sequencing (NGS) data, was recently published in Bioinformatics. Originating from Jeffrey Chuang’s lab at The Jackson Laboratory, CloudNeo is a neoantigen prioritization workflow designed specifically for the cloud. The authors have made the CloudNeo workflow available on the Seven […] Written by Patrick
