Recently published apps

We have just published Picard FastqToSam, a tool that converts FASTQ files to an unaligned SAM or BAM file, and a set of seven Delly tools:

• Delly CNV for calling copy-number variants
• Delly Call, a structural variants caller
• Delly LR, a structural variants caller for long reads data
• Delly Sansa Annotate for annotating structural variants
• Delly Classify for classifying somatic or germline copy-number variants
• Delly Filter, a tool that filters structural variants
• Delly Merge for merging of structural variants in BCF format

Marko Marinkovic