Recently published apps

We published the following apps in our Public Apps gallery:

• Parabricks fq2bam (4.0.0-1) – GPU-accelerated alignment, duplicate marking and optionally BQSR.
• Parabricks haplotypecaller (4.0.0-1) – GPU-accelerated GATK HaplotypeCaller.
• Parabricks deepvariant (4.0.0-1) – GPU-accelerated version of DeepVariant.
• Parabricks Somatic Calling workflow – calling somatic variants from a matched tumor-normal sample pair. It is based on running accelerated Mutect2 on GPU instances with or without a panel of normals.

Marko Marinkovic