Recently published apps

We have published the Bracken 2.7 toolkit:

• Bracken (Bayesian Reestimation of Abundance with KrakEN) tool is used for abundance estimation at the species level, the genus level, or above.
• Bracken Build is used to prepare the reference database for Bracken.

In addition, Metagenomics Profiling – Kraken2 workflow has been published on the Platform. It is used for metagenomic classification, abundance estimation, and visualization.

We have also published the following tools:

• FlowSOM 2.4.0 which presents an algorithm used to distinguish cell populations from both flow and mass cytometry data in an unsupervised way.
• cytofkit2 0.99.80 which is designed to analyze mass cytometry data from FCS files. It includes preprocessing, cell subset detection, cell subset visualization and interpretation, and inference of subset progression.
• flowAI 1.24.0 which performs quality control on FCS data acquired using flow cytometry instruments. By evaluating three different properties: flow rate, signal acquisition, and dynamic range, the quality control enables the detection and removal of anomalies.

Marko Marinkovic